pcr/shogun: updated to 6.1.3

1 files changed, 67 insertions, 18 deletions

diff --git a/pcr/shogun/PKGBUILD b/pcr/shogun/PKGBUILD
index 89cc68a0d..e9fa7eb3e 100644
--- a/pcr/shogun/PKGBUILD
+++ b/pcr/shogun/PKGBUILD
@@ -1,29 +1,78 @@
-# Maintainer (Arch): Zdeněk Janeček <jan.zdenek@gmail.com>
+# Maintainer (AUR): Christian Pfeiffer <xpipe at hotmail dot de>
 # Maintainer: Omar Vega Ramos <ovruni@gnu.org.pe>
 pkgname=shogun
-pkgver=4.0.0
-pkgrel=2
-pkgdesc="Shogun - A Large Scale Machine Learning Toolbox with the python interface"
+pkgver=6.1.3
+pkgrel=1
+pkgdesc="A Large Scale Machine Learning Toolbox"
 arch=('i686' 'x86_64')
-url="http://www.shogun-toolbox.org"
-license=('GPLv3')
-depends=('cblas' 'lapack' 'swig' 'python-numpy' 'libcl')
-makedepends=('cmake')
-source=(http://shogun-toolbox.org/archives/shogun/releases/4.0/sources/$pkgname-$pkgver.tar.bz2)
-md5sums=('57370e869f3b24f74ce9c7b8741000b0')
+url="http://shogun.ml/"
+license=('GPL3')
+depends=('arpack' 'cblas' 'glpk' 'hdf5' 'lapacke' 'libxml2'
+         'json-c' 'lua' 'openblas' 'ocl-icd' 'python' 'r' 'snappy')
+makedepends=('cmake' 'ctags' 'doxygen' 'eigen3' 'gdb' 'opencv' 'pandoc' 'protobuf'
+			 'python-numpy' 'python-ply' 'python-sphinx' 'swig' 'rxcpp')
+optdepends=('opencv: OpenCV support'
+			'python-numpy: Python bindings'
+			'python-ply: Python bindings')
+source=($pkgname-$pkgver.tar.gz::https://github.com/shogun-toolbox/shogun/archive/shogun_$pkgver.tar.gz
+        $pkgname-gpl-$pkgver.tar.gz::https://github.com/shogun-toolbox/shogun-gpl/archive/v$pkgver.tar.gz
+        0001-Removed-is_error-macro-dependency-4098.patch)
+sha256sums=('75f4d555efe06eaa7c4c12a1dc942f6e4d41a8ed495777a790b9bd9df936c19c'
+            'e8e2fea9804d3e0924a318b00a764bbf9d751c29d32adeeffbb83aec9fbca966'
+            '571172d9f31554c1e41cf1e3467cec38c527f1ccf9a2866bf49acfa0c1a84ac4')
+
+prepare() {
+  mkdir build
+  mv -T "${pkgname}-gpl-${pkgver}" "${srcdir}/${pkgname}-${pkgname}_${pkgver}/src/gpl"
+
+  cd "${srcdir}/${pkgname}-${pkgname}_${pkgver}"
+  patch -p1 -i ../0001-Removed-is_error-macro-dependency-4098.patch
+}
 
 build() {
-  cd "${srcdir}/${pkgname}-${pkgver}"
-  mkdir build && cd build
-  DISABLE_SSE=
+  cd build
+
+  cmake_args=()
   if [ "${CARCH}" != "x86_64" ]; then
-    DISABLE_SSE+="-DDISABLE_SSE=ON"
+    cmake_args+=("-DDISABLE_SSE=ON")
   fi
-  cmake -DCMAKE_INSTALL_PREFIX=/usr -DPythonModular=ON ${DISABLE_SSE} ..
+
+  cmake -DCMAKE_INSTALL_PREFIX=/usr -DENABLE_ARPREC=OFF \
+    -DBUILD_EXAMPLES=OFF -DBUILD_META_EXAMPLES=OFF \
+    -DENABLE_ARPACK=ON -DENABLE_BZIP2=ON \
+    -DENABLE_COLPACK=OFF -DENABLE_VIENNACL=OFF \
+    -DENABLE_EIGEN_LAPACK=ON \
+    -DENABLE_CPLEX=OFF -DENABLE_MOSEK=OFF \
+    -DENABLE_NLOPT=OFF -DENABLE_GLPK=ON -DENABLE_LPSOLVE=ON \
+    -DENABLE_CURL=ON -DENABLE_HDF5=ON -DENABLE_JSON=ON \
+    -DENABLE_LDGOLD=ON -DENABLE_LTO=ON \
+    -DENABLE_PROTOBUF=ON -DENABLE_LIBXML2=ON \
+    -DENABLE_BZIP2=ON -DENABLE_LIBLZMA=ON -DENABLE_LZO=ON \
+    -DENABLE_SNAPPY=ON -DENABLE_ZLIB=ON \
+    -DLICENSE_GPL_SHOGUN=ON \
+    -DOpenCV=ON \
+    -DUSE_CPLEX=OFF -DUSE_MOSEK=OFF \
+    -DUSE_GLPK=ON -DUSE_LPSOLVE=ON -DUSE_BZIP2=ON \
+    -DUSE_GZIP=ON -DUSE_LZMA=ON -DUSE_LZO=ON -DUSE_SNAPPY=ON \
+    -DUSE_SVMLIGHT=ON -DUSE_SWIG_DIRECTORS=ON \
+    -DINTERFACE_LUA=ON \
+    -DINTERFACE_PYTHON=ON -DINTERFACE_R=ON \
+    -DCMAKE_BUILD_TYPE=Release -DCMAKE_SKIP_RPATH=ON \
+    -DBUILD_SHARED_LIBS=ON \
+    -DLAPACK_lapack_LIBRARY="/usr/lib/liblapack.so\;/usr/lib/liblapacke.so\;/usr/lib/libcblas.so" \
+    "${cmake_args[@]}" \
+    "${srcdir}/${pkgname}-${pkgname}_${pkgver}"
+
+  make
 }
 
 package() {
-  cd "${srcdir}/${pkgname}-${pkgver}/build"
-  make DESTDIR="$pkgdir/" install
-}
+  cd build
+  make DESTDIR="${pkgdir}" install
 
+  # The minimal example is always being installed
+  rm -r "${pkgdir}/usr/share/shogun/examples"
+
+  # Shogun will install some empty directories
+  find "${pkgdir}" -type d -empty -delete
+}