sagemath-6.8-5.parabola1: downgrading to 6.8 because brial is in [community-testing] yet

* ecl 16.0.0 rebuild

3 files changed, 20 insertions, 17 deletions

diff --git a/libre/sagemath/PKGBUILD b/libre/sagemath/PKGBUILD
index 2837a57bd..b6f87e544 100644
--- a/libre/sagemath/PKGBUILD
+++ b/libre/sagemath/PKGBUILD
@@ -10,13 +10,13 @@
 # Maintainer: André Silva <emulatorman@parabola.nu>
 
 pkgname=sagemath
-pkgver=6.9
-pkgrel=1.parabola1
+pkgver=6.8
+pkgrel=5.parabola1
 pkgdesc="Free Mathematics Software, free software replacement of Magma, Maple, Mathematica, and Matlab, without nonfree nauty recommendation"
 arch=(i686 x86_64)
 url="http://www.sagemath.org"
 license=(GPL)
-depends=(ipython2 atlas-lapack ppl mpfi palp brial singular libcliquer maxima-ecl gfan sympow tachyon python2-rpy2
+depends=(ipython2 ppl mpfi palp polybori singular libcliquer maxima-ecl gfan sympow tachyon python2-rpy2
   python2-matplotlib python2-scipy python2-sympy python2-networkx libgap gap flintqs lcalc lrcalc
   eclib gmp-ecm zn_poly gd python2-cvxopt pynac linbox gsl rubiks pari-galdata pari-seadata-small planarity rankwidth
   sage-data-combinatorial_designs sage-data-elliptic_curves sage-data-graphs sage-data-polytopes_db sage-data-conway_polynomials)
@@ -24,7 +24,7 @@ optdepends=('cython2: to compile cython code' 'jmol: 3D plots' 'sage-notebook: B
   'sagemath-doc: Documentation and inline help' 'ipython2-notebook: Jupyter notebook interface' 'mathjax: Jupyter notebook interface'
   'coin-or-cbc: COIN backend for numerical computations'
   'buckygen: for generating fullerene graphs' 'plantri: for generating some classes of graphs' 'benzene: for generating fusenes and benzenoids'
-  'modular_decomposition: modular decomposition of graphs' 'ffmpeg: to export animations to video'
+  'modular_decomposition: modular decomposition of graphs'
   'lrs: Algorithms for linear reverse search used in game theory and for computing volume of polytopes' 'imagemagick: to show animations'
   'coxeter3: Coxeter groups implementation' 'cryptominisat: SAT solver' 'arb: floating-point ball arithmetic')
 makedepends=(cython2 boost ratpoints symmetrica fflas-ffpack python2-jinja coin-or-cbc
@@ -36,19 +36,21 @@ source=("$pkgname-$pkgver.tar.gz::https://github.com/sagemath/sage/archive/$pkgv
 # "http://www.sagemath.org/packages/upstream/pexpect/pexpect-2.0.tar.bz2" 
 "http://mirrors.mit.edu/sage/spkg/upstream/pexpect/pexpect-2.0.tar.bz2" 'kernel.json'
 'anal.h' 'package.patch' 'env.patch' 'paths.patch' 'clean.patch' 'skip-check.patch' 
-'pexpect-env.patch' 'pexpect-del.patch' 'disable-fes.patch')
-md5sums=('847ad447eaef17b2bc81bb4fae69c190'
+'pexpect-env.patch' 'pexpect-del.patch' 'disable-fes.patch' 'cython-0.23.patch' 'ipython-4.patch')
+md5sums=('943780ef4460e38f28fefe95e3138981'
          'd9a3e113ed147dcee8f89962a8dccd43'
          '4cee4f96bcd877587e7efc40c20adba7'
          'a906a180d198186a39820b0a2f9a9c63'
-         '9ba81f717ffd4e20b8b2f2a318307488'
-         '5ebdb6e6ac541f040a39f8d3fd9c8ee1'
+         'f72e544032b1a3f952b7ddafc3a49d63'
+         '843a6cc3b17a1850604593813321418e'
          'fd8e3e07f5b7318e6a7200a3c64f5bc2'
          '23e972753be1e5d0f761a7f82a95cebf'
          '5947a420a0b1483f0cbc74c76895789b'
          'a83a3b1bc7fcb7cbf752a83a8311fc42'
          'f333939ea6c41377b66407c81016cee4'
-         '4eb23a3c7363258bc9ba764d6e5512ba')
+         '4eb23a3c7363258bc9ba764d6e5512ba'
+         '1b8dfa047115180aa0afbeaf19d97762'
+         '41aa997ad9f00afdc3357b37fc70f0e6')
 
 prepare(){
   cd sage-$pkgver
@@ -64,6 +66,8 @@ prepare(){
   patch -p0 -i ../env.patch
 # fix paths in python imports
   patch -p0 -i ../paths.patch
+# fix cython linking
+  sed -e "s| atlas(),||" -i src/sage/misc/cython.py
 # don't try to remove installed files
   patch -p0 -i ../clean.patch
 # skip checking build status
@@ -77,12 +81,16 @@ prepare(){
   sed -e 's|graph.hh|bliss/graph.hh|' -i src/sage/graphs/bliss.pyx
 # fix opening docs from Jupyter notebook
   sed -e "s|SageKernelSpec.identifier()|'SageMath'|g" -i src/sage/repl/ipython_kernel/kernel.py
+# fix IPython 4 compatibility
+  patch -p0 -i ../ipython-4.patch
 
 # Upstream patches  
 # fix build against libfes 0.2 http://trac.sagemath.org/ticket/15209
 #  patch -p0 -i "$srcdir"/fes02.patch
 # disable fes module, fails to compile
   patch -p0 -i ../disable-fes.patch
+# fix build with cython 0.23
+  patch -p1 -i "$srcdir"/cython-0.23.patch
 
 # use python2
   sed -e 's|#!/usr/bin/env python|#!/usr/bin/env python2|' -e 's|exec python|exec python2|' -i src/bin/*
@@ -131,7 +139,7 @@ package() {
   export SAGE_LOCAL="$SAGE_ROOT"
   export SAGE_SRC="$PWD"
 
-  python2 setup.py install --root="$pkgdir" --optimize=1 --skip-build
+  python2 setup.py install --root="$pkgdir" --optimize=1
 
   mkdir -p "$pkgdir"/usr/bin
   cp bin/sage "$pkgdir"/usr/bin
diff --git a/libre/sagemath/env.patch b/libre/sagemath/env.patch
index b8ca1eb4d..d1429e35e 100644
--- a/libre/sagemath/env.patch
+++ b/libre/sagemath/env.patch
@@ -80,7 +80,7 @@
  if [ -z "$SAGE_REPO_ANONYMOUS" ]; then
      SAGE_REPO_ANONYMOUS="git://trac.sagemath.org/sage.git"
      export SAGE_REPO_ANONYMOUS
-@@ -363,30 +318,17 @@
+@@ -363,25 +318,17 @@
      export SAGE_STARTUP_FILE
  fi
  
@@ -101,13 +101,8 @@
 -        PYTHONPATH="$SAGE_PATH:$PYTHONPATH"
 -    fi
 -    PYTHONHOME="$SAGE_LOCAL"
--    # Set PYTHONNOUSERSITE to avoid picking up non-Sage versions of
--    # Matplotlib, numpy, etc. See http://trac.sagemath.org/ticket/14243
--    # and http://trac.sagemath.org/ticket/18955.
--    PYTHONNOUSERSITE=yes
 -    export PYTHONPATH
 -    export PYTHONHOME
--    export PYTHONNOUSERSITE
 -fi
 +PYTHONPATH="/usr/lib/sage/site-packages:$PYTHONPATH"
 +PYTHONHOME="$SAGE_ROOT"
diff --git a/libre/sagemath/package.patch b/libre/sagemath/package.patch
index b2a0d2dcf..0b219ddeb 100644
--- a/libre/sagemath/package.patch
+++ b/libre/sagemath/package.patch
@@ -4,7 +4,7 @@
      Otherwise, installing "pillow" will cause this function to think
      that "pil" is installed, for example.
      """
--    return any(p.split('-')[0] == package for p in installed_packages())
+-    return any(p.split('-')[0] == package for p in install_package())
 +    return True
  
  def package_versions(package_type, local=False):