jmol: add new packages to [libre]

2 files changed, 127 insertions, 0 deletions

diff --git a/libre/jmol/PKGBUILD b/libre/jmol/PKGBUILD
new file mode 100644
index 000000000..a4446f7c3
--- /dev/null
+++ b/libre/jmol/PKGBUILD
@@ -0,0 +1,64 @@
+# Maintainer: Omar Vega Ramos <ovruni@gnu.org.pe>
+
+pkgname=jmol
+pkgver=14.6.4
+_pkgver=${pkgver}_2016.10.02
+pkgrel=1.parabola1
+pkgdesc="a Java 3D viewer for chemical structures"
+arch=(any)
+url="http://jmol.sourceforge.net"
+license=(LGPL)
+depends=('java-runtime')
+makedepends=('apache-ant-contrib' 'icedtea-web' 'java-commons-cli' 'java-naga' 'saxon6' 'unzip')
+source=("http://sourceforge.net/projects/jmol/files/Jmol/Version%20${pkgver%.*}/Version%20$pkgver/Jmol-$_pkgver-full.tar.gz"
+        'jmol-14.6.4_dontsign.patch')
+sha1sums=('ac2dea8a62a3346590994fe74b014f5e69e02bef'
+          '03c3ba2a05d0e2192a627b6cd00219b5e4389e75')
+
+prepare() {
+  cd $pkgname-$_pkgver
+  rm src/com/sparshui/cpp/HPTouchSmart/*.{dll,exe}
+  rm -v {.,jars,plugin-jars,tools}/*.jar
+  rm -v doc/jcfl-*.tar.gz
+  #rm -v jsmol.zip
+
+  patch -Np1 -i ../jmol-14.6.4_dontsign.patch
+
+  ln -sf /usr/share/icedtea-web/plugin.jar jars/netscape.jar
+  ln -sf /usr/share/java/commons-cli.jar jars/commons-cli-1.2.jar
+  ln -sf /usr/share/java/naga-3_0.jar jars/naga-3_0.jar
+  ln -sf /usr/share/java/saxon.jar jars/saxon.jar
+}
+
+build() {
+  cd $pkgname-$_pkgver
+  ant classes \
+    -lib /usr/share/java/ant-contrib.jar
+  jar -cvf jars/JSpecView.jar -C build/classes/ jspecview
+
+  ant init jar applet-jar doc \
+    -lib /usr/share/java/ant-contrib.jar
+}
+
+package() {
+  cd $pkgname-$_pkgver
+
+  # Install license file
+  install -Dm644 LICENSE.txt "$pkgdir/usr/share/licenses/$pkgname/LICENSE.txt"
+
+  # Install documentation
+  install -d "$pkgdir/usr/share/doc/$pkgname"
+  cp -r build/javadoc "$pkgdir/usr/share/doc/$pkgname"
+
+  # Install jsmol
+  unzip appletweb/jsmol.zip -d "$pkgdir/usr/share/"
+
+  # Install jmol
+  install -d "$pkgdir/usr/share/$pkgname"
+  cp build/{Jmol,JmolData,JmolLib}.jar "$pkgdir/usr/share/$pkgname"
+  cp jars/JSpecView.jar "$pkgdir/usr/share/$pkgname"
+  cp build/jmol.sh "$pkgdir/usr/share/$pkgname"
+
+  install -d "$pkgdir/usr/bin"
+  ln -s "/usr/share/$pkgname/$pkgname.sh" "$pkgdir/usr/bin/$pkgname"
+}
diff --git a/libre/jmol/jmol-14.6.4_dontsign.patch b/libre/jmol/jmol-14.6.4_dontsign.patch
new file mode 100644
index 000000000..daccac469
--- /dev/null
+++ b/libre/jmol/jmol-14.6.4_dontsign.patch
@@ -0,0 +1,63 @@
+--- jmol-14.6.4_2016.10.02.orig/build.xml	2016-10-02 23:01:03.000000000 -0500
++++ jmol-14.6.4_2016.10.02/build.xml	2016-11-09 18:43:28.077873627 -0500
+@@ -159,7 +159,7 @@
+     </fileset>

+   </path>

+ 

+-  <target name="main" id="main" depends="init,jar,applet-jar,signed-applet,smiles-applet-jar"/>

++  <target name="main" id="main" depends="init,jar,applet-jar,smiles-applet-jar"/>

+   

+   <target name="all" id="all" depends="doc,main"/>

+ 

+@@ -520,10 +520,10 @@
+       <fileset dir="src/org/jmol/translation/Jmol" includes="Messages*.class"/>

+       <fileset dir="src/org/jmol/translation/JmolApplet" includes="Messages*.class"/>

+     </jar>

+-    <antcall target="sign-jar-file">

++    <!--<antcall target="sign-jar-file">

+       <param name="sign-jar-file-dir" value="build" />

+       <param name="sign-jar-file-name"  value="Jmol.jar" />

+-    </antcall>

++    </antcall>-->

+   	

+     <jar destfile="build/JmolData.jar"

+          manifest="manifest/applicationData.txt">

+@@ -555,10 +555,10 @@
+       <fileset dir="src/org/jmol/translation/Jmol" includes="Messages*.class"/>

+       <fileset dir="src/org/jmol/translation/JmolApplet" includes="Messages*.class"/>

+     </jar>

+-    <antcall target="sign-jar-file">

++    <!--<antcall target="sign-jar-file">

+       <param name="sign-jar-file-dir" value="build" />

+       <param name="sign-jar-file-name"  value="JmolData.jar" />

+-    </antcall>

++    </antcall>-->

+ 

+     <copy todir="build">

+       <fileset dir=".">

+@@ -586,10 +586,10 @@
+       </fileset>

+       <fileset dir="${appjars.dir}" includes="**/*"/>

+     </jar>

+-    <antcall target="sign-jar-file">

++    <!--<antcall target="sign-jar-file">

+       <param name="sign-jar-file-dir" value="build" />

+       <param name="sign-jar-file-name"  value="Jvxl.jar" />

+-    </antcall>

++    </antcall>-->

+   	<!--

+     <jar destfile="ChimeToJmol.jar"

+          manifest="manifest/chimetojmol.txt">

+@@ -1163,10 +1163,10 @@
+       </indexjars>

+     </jar>

+   	<echo> signing JmolApplet*.jar</echo>

+-    <antcall target="sign-jar-file">

++    <!--<antcall target="sign-jar-file">

+       <param name="sign-jar-file-dir" value="build" />

+       <param name="sign-jar-file-name"  value="JmolApplet*.jar" />

+-    </antcall>

++    </antcall>-->

+   </else></if>

+   </target>

+